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Research


Rodrigue Govan holds a Ph.D. in Computer Science (Data Science). His dissertation is entitled “Deep Learning on Attributed Graphs for Mapping Leptospirosis Risk”. He defended his thesis on August 21, 2025, at the University of New Caledonia.

This thesis was conducted under the supervision of Nazha Selmaoui-Folcher, Full Professor of Computer Science at the University of New Caledonia, and Philippe Fournier-Viger, Distinguished Professor of Computer Science at Shenzhen University (China).

The members of the thesis committee were as follows:

  • Christophe Menkès, Senior Research Scientist, ChairEntropie, French National Research Institute for Sustainable Development, New Caledonia
  • Thomas Guyet, Full Researcher, Reviewer — AIstroSight, INRIA, Lyon, France
  • Luiz-Angelo Steffenel, Full Professor, Reviewer — LICIIS, Université de Reims Champagne-Ardenne, France
  • Cyrille Goarant, Habilitated Research Scientist, Examiner — Public Health Department, South Pacific Community (SPC), New Caledonia
  • Corina Iovan, Research Scientist, ExaminerEntropie, French National Research Institute for Sustainable Development, New Caledonia
  • Nadia Kabachi, Full Professor, Examiner — ERIC, Claude Bernard University Lyon 1, France

The Ph.D. manuscript is available here (written in French), and the defense presentation is available here.

This thesis explored supervised learning methods applied to leptospirosis risk mapping in New Caledonia. A holistic approach was adopted, involving the collection, preprocessing, and integration of a wide range of data, including meteorological, environmental, and socio-demographic variables. Risk mapping was performed using all leptospirosis cases recorded between 2011 and 2022, at a spatial scale finer than the municipality level, and on a monthly temporal resolution. This spatio-temporal granularity introduced a significant challenge of imbalanced data. Combined with several data sampling strategies, two main approaches were developed.

The first approach integrates ensemble learning with under-sampling and hybrid sampling strategies for model training, along with weighted prediction mechanisms to optimize its performance. Following the conclusive results obtained with this ensemble-based method, an explainability component was developed to identify the main factors contributing to leptospirosis risk. Although this first approach produced satisfactory results, it required the use of multiple supervised learning models.

In parallel, the thesis investigated graph neural network (GNN) methods, specifically the problem of optimal reduction of attributed graphs within a GNN model by combining existing pooling techniques. This hybrid method, named SpaPool, proved comparable to existing methods, while demonstrating a certain advantage when dealing with small attributed graphs. Given the effectiveness of attributed graph representations, the second approach for leptospirosis risk mapping was based on a single GNN model. Combined with various sampling strategies, this approach yielded promising results, achieving more balanced sensitivity and specificity scores than the ensemble-based approach.

The contributions presented in this thesis, both methodological and applicative, open new opportunities for studying other health-related and anthropogenic phenomena.

During his Ph.D., Rodrigue also taught undergraduate students (Bachelor’s and DEUST levels). His teaching activities included algorithm design and Python programming, graph theory, as well as database management and manipulation.


Publications #

Journal papers with peer review #

[3] Govan, R., Scherrer, R., Fougeron, B., Laporte-Magoni, C., Thibeaux, R., Genthon, P., Fournier-Viger, P., Goarant, C., Selmaoui-Folcher, N. (2025). Spatio-temporal risk prediction of leptospirosis: A machine-learning-based approach. In: PLOS Neglected Tropical Diseases, 19(1), e0012755.
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[2] Thibeaux, R., Genthon, P., Govan, R., Selmaoui-Folcher, N., Tramier, C., Kainiu, M., Soupé-Gilbert, M.-E., Wijesuriya, K., Goarant, C. (2024). Rainfall-driven resuspension of pathogenic Leptospira in a leptospirosis hotspot. In: Science of The Total Environment, 911, 168700.
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[1] Scherrer, R., Govan, R., Quiniou, T., Jauffrais, T., Lemonnier, H., Bonnet, S., Selmaoui-Folcher, N. (2022). Real-Time Automatic Plankton Detection, Tracking and Classification on Raw Hologram. In: International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics (pp. 25-39). Springer, Cham.
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International conferences with peer review #

[5] Govan, R., Scherrer, R., Fournier-Viger, P., Selmaoui-Folcher, N. (2025). SpaPool: Soft Partition Assignment Pooling for Graph Neural Networks. In: Leung, C.K., Dignös, A., Kotsis, G., Tjoa, A.M., Khalil, I. (eds) Big Data Analytics and Knowledge Discovery. DaWaK 2025. Lecture Notes in Computer Science, vol 16048. Springer, Cham.
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[4] Govan, R., Selmaoui-Folcher, N., Giannakos, A., Fournier-Viger, P. (2023). Co-location Pattern Mining Under the Spatial Structure Constraint. In: Strauss, C., Amagasa, T., Kotsis, G., Tjoa, A.M., Khalil, I. (eds) Database and Expert Systems Applications. DEXA 2023. Lecture Notes in Computer Science, vol 14146. Springer, Cham.
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[3] Tokotoko, J., Govan, R., Lemonnier, H., Selmaoui-Folcher, N. (2022). Multiscale and Multivariate Time Series Clustering: A New Approach. In: Ceci, M., Flesca, S., Masciari, E., Manco, G., Raś, Z.W. (eds) Foundations of Intelligent Systems. ISMIS 2022. Lecture Notes in Computer Science(), vol 13515. Springer, Cham.
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[2] Scherrer, R., Govan, R., Quiniou, T., Jauffrais, T., Lemonnier, H., Bonnet, S., Selmaoui-Folcher, N. (2021, November). Automatic Plankton Detection and Classification on Raw Hologram with a Single Deep Learning Architecture. In: CIBB 2021 Computational Intelligence Methods for Bioinformatics and Biostatistics.
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[1] Tokotoko, J., Selmaoui-Folcher, N., Govan, R., Lemonnier, H. (2021). TSX-Means: An Optimal K Search Approach for Time Series Clustering. In: Strauss, C., Kotsis, G., Tjoa, A.M., Khalil, I. (eds) Database and Expert Systems Applications. DEXA 2021. Lecture Notes in Computer Science(), vol 12924. Springer, Cham.
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National conferences with peer review #

[3] Govan, R., Scherrer, R., Fournier-Viger, P., Selmaoui-Folcher, N. (2025). Pooling de Graph Neural Networks : une approche dense mais adaptative. In: CNIA 2025-Conférence Nationale en Intelligence Artificielle, PFIA (No. 55-63).
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[2] Govan, R., Scherrer, R., Goarant, C., Cannet, A., Fournier-Viger, P., Selmaoui-Folcher, N. (2025, January). Cartographie du risque épidémiologique : Le défi des données fortement déséquilibrées. In: Revue des Nouvelles Technologies de l'Information, 25èmes Journées Francophones Extraction et Gestion des Connaissances, EGC 2025, vol. RNTI-E-41. (pp. 159-170).
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[1] Govan, R., Selmaoui-Folcher, N., Giannakos, A., Fournier-Viger, P. (2023, July). Extraction de co-localisations sous contrainte de la structure spatiale. In: CNIA 2023-Conférence Nationale en Intelligence Artificielle, PFIA (No. 53-61).
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Posters and workshops #

[2] Genthon, P., Thibeaux, R., Selmaoui-Folcher, N., Govan, R., Kainiu, M., Soupé-Gilbert, M.-E., and Goarant, C. (2025). Leptospirosis: a critical zone disease? In: 3rd OZCAR TERENO International Conference, Advancing Critical Zone Science. (Vol. 2025, pp. S14-P2).
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[1] Genthon, P., Thibeaux, R., Selmaoui-Folcher, N., Govan, R., Kainiu, M., Soupé-Gilbert, M. E., Goarant, C. (2024). Leptospira in Rivers of a Leptospirosis Hotspot: Scale Effects. In: AGU Fall Meeting Abstracts, (Vol. 2024, No. 1055, pp. H13D-1055).
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Reports and thesis #

[2] Govan, R. (2025). Deep Learning on Attributed Graphs for Mapping Leptospirosis Risk. Ph.D. thesis (French). University of New Caledonia.
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[1] Govan, R. (2019). Deep learning: Residential Pool Detection in France. M.Sc. thesis (French). University of Bordeaux, France.

Other communications #

[3] Govan, R., Parmentier, J.-B., and Quiniou T. (2025). Discovering an interactive 3D model of New Caledonia. In: 8th Edition of Science Evening, Science Fair 2025. University of New Caledonia.
[2] Govan, R. (2023). Scientific research at the service of data. In: 7th meetup dedicated to data. ISI-NC, OoTech. New Caledonia.
[1] Govan, R. (2022). Evolving and Dynamic Attributed Graphs: Application to the Risk Mapping of Leptospirosis in New Caledonia. In: 15ème Edition of "Doctoriales". Doctoral School of Pacific (ED469). University of New Caledonia.